Genomics Quality Assessment Masterclass

Genomics Quality Assessment Masterclass
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  • 27 November 2025
  • Sidra Medicine

Target Audience

  • Physicians
  • Allied Health Professionals
  • Nurses
  • Others (Scientists and Researchers)

Facilitator/s

  1. Prof Sandi Deans (Director, Registered Consultant Clinical Scientist)
  2. Bettina Quellhorst (Quality Manager, Quality Manager)

Overall Learning Objectives

  • Identify the key components of an accredited genomic diagnostics workflow by the end of the training session.
  • Apply ACMG/AMP variant interpretation guidelines consistently in evaluating case studies of germline and somatic variants.
  • Distinguish between different types of External Quality Assessment (EQA) programs and their implementation timelines within 3 months post-training.
  • Assess laboratory reports for quality assurance using real-time EQA exercises and score them according to standardized criteria.
  • Implement standard operating procedures (SOPs) for reporting genomic test results (e.g., NIPT, arrays, PGT) within 30 days in their own laboratories.
  • Develop a plan for internal competency assessment that meets accreditation standards within 4 weeks of the masterclass.
  • Evaluate common EQA errors from published reports and describe corrective actions during breakout exercises.
  • Demonstrate the ability to review and annotate a genomic test report as an EQA assessor during the practical simulation module.

Program Overview

Time Session Title/Topic Session-Specific Learning Objectives
At the end of this session, participants will be able to:
09:00-09:30 AM
(0.5 hrs)
Opening Session: Elevating Excellence in Genomic Testing

Prof Sandi Deans

  • Describe the foundational principles of genomic quality assurance and its role in ensuring patient safety and diagnostic accuracy across clinical and research settings.
  • Recognize the global and institutional drivers for implementing quality frameworks, including accreditation standards (e.g., ISO 15189) and the impact of quality metrics on clinical decision-making.
  • Outline the structure, scientific scope, and intended outcomes of the masterclass, including how each session addresses identified learner gaps in genomic testing and quality improvement.
09:30-10:30
(1 hrs)
Introduction to GenQA

Speaker: Prof Sandi Deans

  • Explain the mission, structure, and scope of GenQA as a provider of external quality assessment (EQA) in genomic medicine.
  • Identify the types of EQA schemes offered by GenQA and how they support quality improvement in germline, somatic, and reproductive genomics.
  • Understand the role of GenQA participation in laboratory benchmarking, performance assessment, and meeting international accreditation standards (e.g., ISO 15189, CAP).
10:30-11:00 AM
(0.5 hrs)
The importance of Accreditation and Quality Management (real world examples) – BQ (Part 1)

Speaker: Bettina Quellhorst

  • Differentiate between key accreditation frameworks (e.g., ISO 15189, CAP) and describe their role in ensuring compliance, competency, and continual improvement in genomic laboratories.
  • Evaluate real-world case studies that highlight the consequences of inadequate quality management and the benefits of implementing robust Quality Management Systems (QMS).
  • Apply lessons learned from external audits, incident reports, and corrective action plans to improve internal quality practices and prepare for successful accreditation.
11:00 – 11:30 AM Coffee Break
11:30 – 12:00 PM
(0.5 hrs)
The importance of Accreditation and Quality Management (real world examples) – BQ (Part 2, cont.)

Speaker: Bettina Quellhorst

  • Differentiate between key accreditation frameworks (e.g., ISO 15189, CAP) and describe their role in ensuring compliance, competency, and continual improvement in genomic laboratories.
  • Evaluate real-world case studies that highlight the consequences of inadequate quality management and the benefits of implementing robust Quality Management Systems (QMS).
  • Apply lessons learned from external audits, incident reports, and corrective action plans to improve internal quality practices and prepare for successful accreditation.
12:00 – 01:00 PM
(1 hrs)
Introducing Individual Competency Assessment, and why it is important

Speaker: Prof Sandi Deans

  • Define individual competency assessment in the context of genomic diagnostics and explain its role in ensuring staff proficiency and patient safety.
  • Identify key components of a competency assessment framework, including initial training, ongoing evaluation, documentation, and remediation.
  • Interpret examples of competency gaps from real laboratory settings and outline strategies for implementing effective, role-specific assessments aligned with accreditation requirements.
01:00 – 02:00 Lunch Break
2:00 – 2:30 PM
(0.5 hrs)
Learnings from the 100,000 Genomes project

Speaker: Prof Sandi Deans

  • Summarize the objectives, design, and outcomes of the 100,000 Genomes Project and its impact on integrating genomics into mainstream healthcare.
  • Identify key lessons learned in quality assurance, data interpretation, and reporting from large-scale genomic implementation across clinical services.
  • Apply insights from the project to inform best practices in establishing national genomic programs, with a focus on sample handling, variant classification, and multidisciplinary reporting.
2:30 – 3:00 PM
(0.5 hrs)
The Genomic Medicine Service in England

Speaker: Prof Sandi Deans

  • Describe the structure and strategic objectives of the NHS Genomic Medicine Service (GMS) in England, including its integration into routine healthcare.
  • Explain how standardized testing pathways, quality assurance frameworks, and national genomic laboratory networks contribute to consistent and equitable patient care.
  • Evaluate how lessons from the GMS model can inform the development and scaling of genomic services in other healthcare systems, with emphasis on governance, data sharing, and clinical utility.
3:00 – 3:30 PM
(0.5 hrs)
What is EQA and why it is useful

Speaker: Bettina Quellhorst

  • Define External Quality Assessment (EQA) and distinguish it from internal quality control (IQC) within the context of genomic laboratory services.
  • Explain the purpose and benefits of participating in EQA schemes, including benchmarking performance, identifying errors, and supporting continuous improvement.
  • Interpret EQA results and feedback to drive corrective actions, enhance reporting accuracy, and meet accreditation requirements (e.g., ISO 15189, CAP).
03:30-04:00 PM
(0.5 hrs)
Learning from common EQA errors

Speaker: Prof Sandi Deans

  • Identify frequently observed errors in EQA submissions across different genomic test types (e.g., NGS, arrays, NIPT) and understand their root causes.
  • Evaluate the impact of these errors on diagnostic accuracy, clinical interpretation, and patient safety using real case examples from past EQA rounds.
  • Develop strategies to prevent common EQA pitfalls by improving internal review processes, staff training, and adherence to standardized reporting guidelines.
04:00-04:30 PM
(0.5 hrs
Real time EQA assessment

Speaker: Prof Sandi Deans

  • Demonstrate the ability to assess genomic laboratory reports in real time using EQA assessor criteria and scoring rubrics.
  • Apply standardized benchmarks to evaluate accuracy, clarity, and clinical relevance in genomic test reporting across various modalities.
  • Critique anonymized submissions through guided peer review and provide constructive feedback aligned with best practice and accreditation standards.
04:30- 05:00 PM
(0.5 hrs)
New Developments in Genomic Quality Assurance

Speaker: Prof Sandi Deans

  • Describe emerging technologies and methodologies impacting genomic quality assurance, including advances in multi-omics, long-read sequencing, and AI-assisted variant interpretation.
  • Recognize updates to international guidelines, accreditation standards (e.g., ISO 15189:2022), and evolving requirements in EQA schemes.
  • Assess the implications of these developments on laboratory workflows, reporting practices, and workforce training needs to ensure continued service excellence.

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